You can specify a vector of plot handles to use in the legend. For example:
h1 = plot(rand(1,10)); % Blue line hold on; h2 = plot(rand(1,10),'r'); % Red line h3 = plot(rand(1,10),'g'); % Green line legend([h1 h3],{'hello','world'}); % Only the blue and green lines appear % in the legend
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